I have installed MGL tools as per the protocol, and the tool is working but am not able to view the molecule.
Can someone help me out with problem to solve it.
Hey Francis Lazar !
By the way, you opened the wrong module.
Try opening AutoDockTool and load your molecule to perform molecular docking. (PS: AutoDockTool has a blue color icon with a white background.)
if you still face difficulty in finding AutoDockTool, simply open your PowerShell or command prompt and type adt in the command line
Addition to the given answer, be sure the that the molecule is saved in a format readable by Autodock tools
Abdeen Tunde Ogunlana Thanks for taking your time and replying to my questions, the error still sustains in the same manner.
Mohamed asif Shajahan Thanks for taking your time and replying to my questions, the error still sustains in the same manner.
not clear how you draw structure ie by which software.
you draw structure first and conver in to 3d structrue then convert in to pdb and then open in mgl tools you look the ligand structure
ideally we download the structure from https://www.rcsb.org/
I have attached the charging curve from the battery tester for review. I need help on what is happening
21 July 2024 6,898 2 View
I got a viscous gel after precipitating it in water at 80 C. Additionally, I performed freeze drying and still got a viscous gel. Could I be having entrapped water in the triblock polymer? What is...
21 June 2024 8,650 2 View
I want to know the theories for addressing challenges encountered in the implementation of HRMIS/HCMIS/HRIS in Tanzania. Are they flexible in Tanzanian context?
17 May 2024 954 1 View
Neuwinger et al. (2019) conducted a comprehensive analysis to determine the effect of underfilling vacuum blood collection tubes on lactate dehydrogenase (LD) activity. Underfilling tubes resulted...
09 April 2024 5,044 2 View
Does succession planning determine the longevity and sustainability of a higher education institution?
30 March 2024 2,009 3 View
Dear colleagues, I am looking for advice on the validation of a standard questionnaire that I intend to translate. The original version contains 40 items. Could you please tell me what sample...
26 March 2024 1,660 11 View
Research
16 March 2024 766 4 View
16 March 2024 4,296 5 View
We are conducting a survey on the satisfaction rates with existing software tools for power system analysis. This initiative aims to collect insights from industry professionals regarding their...
10 March 2024 10,106 3 View
When conducting simulations within the NetSim 5G environment, I aim to quantify handover occurrences accurately as user equipment moves between base stations. I am looking for guidance on the...
03 March 2024 5,294 4 View
Molecular docking software/ websites?
02 August 2024 8,704 7 View
Good day, I am a student trying to work on Autodock for a project regarding Ligand-DNA interaction so i am quite new to molecular docking. i have followed tutorials and did all the steps...
28 July 2024 2,136 4 View
I wanted to know whether we can observe the synergistic/antagonistic/additive properties of combinations or mixtures of compounds through docking analysis. But during docking preparation any...
28 July 2024 7,413 6 View
Hi all, My lab has Thermo Scientific™ Invitrogen™ EVOS™ FL Auto 2 Imaging System, and I was wondering if I will be able to use it with whole blood, whilst focusing on platelets? The idea would...
24 July 2024 9,337 3 View
A molecule shows the -11.6 kcal/mol and second one -8.0 kcal/mol so why molecule (A) revealed higher binding score. Please explain major factor involve in it.
21 July 2024 954 5 View
I have performed docking of proteins with two ligands, both ligands show affinity. I want to check the effect if we join both ligands and perform docking
20 July 2024 2,653 2 View
I have conducted virtual screening using Schrödinger on a database of 17,000 molecules. Unfortunately, I cannot use the system with the Schrödinger license at the moment. I am trying to find a way...
18 July 2024 2,881 4 View
I have used Schrödinger (Glide) for docking
13 July 2024 3,003 1 View
In the peptide-HLA-TCR docking process, can we express the result of peptide-HLA docking in RMSD and for peptide-HLA to TCR docking, can results be expressed in binding affinity?
11 July 2024 4,831 0 View
Silver Nanoparticles docking with alpha amylase and alpha glusidase .
11 July 2024 6,883 2 View