How do i get a two structures get closer together using GROMACS 2020.6?

28 April 2025 0 10K Report

Hi! I am a beginner of using GROMACS for my undergraduate thesis. I am having difficulties on making a two chemical structure to get closer together although I did all my best to translate it and troubleshooting all my code. I also used some alternative softwares like avogadro and VESTA but I am still having difficulties. Please, help me how will fix this

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