I want to calculate traits values of every plant speices considering phylogeny, e.g. traits values after removing the phylogenetic signal. I have calculate node traits values with PIC in R. However, I want to get tip traits values.
Basically I'm helping with the matrix using a cosmolitan group, could one of the characters used for be biogeographical regions (Neartic, Neotropical, etc)? Most of the data in this matrix refers...
25 July 2024 9,753 2 View
"Nuclear-mitochondrial DNA segments (NUMTs) are mitochondrial DNA (mtDNA) fragments that have been inserted into the nuclear genome." (Xue et al., 2023) I would like to know under this...
20 June 2024 603 1 View
I have been running my phylogeny tree in MEGA X. My phylogeny tree doesn't seem to have any major differences between species in plain view, but the branches are becoming more clearly divided and...
16 May 2024 1,478 1 View
For phylogenetic analysis using SSRs, normally we don't use just one SSR, but a set of multiple SSRs to ensure accuracy. So how can we input these data into NTSYS? I know input for one SSR is as...
13 May 2024 1,867 1 View
From bolztmann equation to Fulid model or Drift-Diffusion model, What assumption we made? such as maxwell distribution or local thermal equilibrium.
08 April 2024 1,968 1 View
Guys, I need help with phylogeny. I am very new to this field and currently trying to position a bacterial strain. I have selected four crucial loci for the genus, but I am encountering...
02 March 2024 6,182 3 View
I faced with a problem, and I think you can help me regarding this issue. I have sent one of my PCR poducts (ITS1-ITS4) to a company in order to sequence it. Indeed, I sent them various PCR...
01 February 2024 2,626 3 View
I am learning to barcode nematodes and was wondering which primer can be used to determine a species in the Bursaphelenchus genus. I do not need to maximize the phylogenetic relationship, just a...
01 February 2024 5,207 0 View
Suppose we are performing a phylogenetic analysis among different fungal species and we wanted to see how closely our species of interest is related with the other species across different...
28 January 2024 9,895 4 View
I need to know to which taxonomic levels (from phylum to species) the following approaches allow prokaryote identification: a) morphology-based approaches b) chemotaxonomy c) GC content d)...
23 January 2024 4,523 6 View