The docking structure is not reliable. You cannot use them to analyze the protein-ligand interaction. This is already unacceptable in modern computational community.
>>>use interfaceResidues (http://www.protein.osaka-u.ac.jp/rcsfp/supracryst/suzuki/jpxtal/Katsutani/en/interface.php) command if you have docked product having two chains (i.e the docking has product of two proteins as same sequence).
>>>if you found docking results with separate sequence (like from Cluspro), combine the two protein first. for this go to action of one protein and select "copy to object" and copy it to other protein. after that run the interfaceResidues command mention above.
>>> use list_hbond command to see hydrogen bonding between two