Dear All,
I need the help of a specialist in crystallography. I am solving a structure of a lanthanide based complex which is relatively large using XShell version 6.3.1 . In attempt to "Refine all non-H atoms anisotropically" I get the alert below.
Normal refinement works but I can't refine non-H atoms anisotropically. This implies that I can't also add H-atoms nor write the Crystallographic Information File (CIF).
The reason for the alert is given at the bottom part of the alert as ** ARRAYS TOO SMALL - INCREASE -b **. I am not sure I understand what this means. At first, I thought it was referring to the crystal unit cell dimension, but how possible is it for me to manually increase the b-axis? That doesn't make sense to me. Can anyone help? Thanks in advance.
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+ SHELXTL XLMP CRYSTAL STRUCTURE REFINEMENT - MULTI-CPU VERSION +
+ Copyright(c) Bruker AXS Inc. 1993-2014 Version 2014/7 +
+ 170921_DyAcOBTC2H5NVAA_py started at 10:37:23 on 20-Oct-2017 +
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Command line parameters: 170921_DyAcOBTC2H5NVAA_py_0m_a -a50000 -b3000 -c624 -t4
-a sets the approximate maximum number of atoms including hydrogens.
-b sets the maximum number of full-matrix parameters (leave unchanged for
CGLS). For example -b9000 allows refinement of 1000 anisotropic atoms or
3000 with BLOC 1. For a 32-bit version, -b times the square root of the
number of threads should not exceed about 65500. -c sets the reflection
buffer size. This depends on the CPU cache size but will rarely need
changing. -t sets the number of threads, otherwise the multi-CPU version
sets this equal to the number of available CPUs. For optimal performance
on systems with hyperthreading, usually the hyperthreading should be
switched off or -t used to halve the number of threads; e.g. -t4 rather
than -t8 for an Intel i7 processor.
Running 4 threads on 4 processors
Read instructions and data
Data: 12214 unique, 0 suppressed R(int) = 0.0912 R(sigma) = 0.1484
Systematic absence violations: 0 Bad equivalents: 0
3052 l.s. parameters for cycle 1
** ARRAYS TOO SMALL - INCREASE -b **
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+ 170921_DyAcOB finished at 10:37:26 Total elapsed time: 3.71 secs +
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