Dear All,

I have a peptide having the following synthetic amino acid, that needs to simulate using Gromacs. I have selected CHARMM36 force field and the initial topology for the synthetic amino acid has been generated using CHARMM-GPU.

I have modified the forcefield files acordingly. (.rtp and .hdb) .

Can anyone suggest to me how to modify ffbonded.itp and ffnonbonded.itp files?

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