Check this out for the calculation: http://math.arizona.edu/~hzhang/waeso/vsTutorial.pdf
Additionally, XL-Stat computes during its PLS-R algorithm. Check this: http://www.xlstat.com/en/learning-center/tutorials/running-a-partial-least-squares-regression-with-xlstat.html
XL-Stat has 30 days trial version and it is easy to use.
Hope this helps!
Attila
The author of the R package 'pls' provides add-on R code to calculate VIP here:
http://mevik.net/work/software/pls.html
Best regards,
Hanif
Hi,
Currently a new publication illustrates the first time the theoretical background of VIP, SR methods at:
http://www.researchgate.net/publication/264936800_Interpretation_of_Variable_Importance_in_Partial_Least_Squares_with_Significance_multivariate_correlation_(SMC)
Success !
Thanh Tran
Article Interpretation of variable importance in Partial Least Squar...
Hi Dai Fugui,
Did you find THE solution ? I have the same limitation ...
Thanks in advance,
Best regards
Interesting question. Does everyone know whether The Unscrambler includes a function for VIP selection? Unscrambler users: what do you prefer to select the most most important wavelengths in a PLS regression model?
A very good publication with specific function description to calculate VIP is here:
Article A review of variable selection methods in Partial Least Squa...
If anybody wants to do this in Python, you can use the following method:
def _calculate_vips(model):
t = model.x_scores_
w = model.x_weights_
q = model.y_loadings_
p, h = w.shape
vips = np.zeros((p,))
s = np.diag(np.matmul(np.matmul(np.matmul(t.T,t),q.T), q)).reshape(h, -1)
total_s = np.sum(s)
for i in range(p):
weight = np.array([ (w[i,j] / np.linalg.norm(w[:,j]))**2 for j in range(h) ])
vips[i] = np.sqrt(p*(np.matmul(s.T, weight))/total_s)
return vips
Where model is a trained instance of a PLSRegression object.
Nicola Caporaso I am trying to calculate the VIP using the PLS analysis of the Unscrambler software? Did you find the solution?
This question also interests me. Were you able to get VIPESCORE from Unscrambler X data? Judit Rubio Delgado
@David Campelo, at the end I considered the RMSE of calibration and validation, as well as the coefficient variation of the models to evaluate the robutness.
Thank you Judit Rubio Delgado ! I also used these metrics (RMSEcal and RMSEval). The VIPecore can be calculated from the "loading weights X" and the "explained variance Y" on each factor retained in the PLS. All this data is obtained in the Unscrambler X PLS analysis report.
VIP for PLS and OPLS using p loadings and sum of squares of both X and Y can be found here: Article Variable influence on projection (VIP) for orthogonal projec...
If someone has problems accessing the article, please let me know.
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