i want to run MD-simulation of small molecule (Ligand only) with NAMD/VMD . if someone has script for this kindly provide me..........Thanks
I want to know more about Uranium ore deposits in world.
11 August 2024 6,720 0 View
I want to know more about diamond ore deposits in world.
11 August 2024 2,167 1 View
We assume that the difference is huge and that it is not possible to compare the two spaces. The R^4 mathematical space considers time as an external controller and the space itself is immobile in...
10 August 2024 6,678 14 View
If Banks do not provide credit facility, what are the options available for FPOs and impact on producer’s income?
10 August 2024 8,198 5 View
I used eye tracking to examine how participants from two different populations (A and B) react to an image. Participants in population A exhibit larger pupil sizes over time, but they also have...
10 August 2024 3,229 0 View
What are a “Farmers Producer Organization” (FPO) and its essential features?
10 August 2024 477 5 View
I have been doing the m6A dot blot for a while with no improvement, I am extracting the RNA, and I can see the dots although the three biological replicas give a different reading on the memberan...
10 August 2024 8,539 5 View
How do interactions between the biosphere, the carbon cycle, and the water cycle impact global warming and interaction between the atmosphere and the hydrosphere?
09 August 2024 3,291 2 View
I have input a moment load in module load Abaqus, i put my moment load on the node surface (using reference point). I have define moment in history output and make a set for moment too. But the...
08 August 2024 4,831 4 View
How is energy cycled through the Earth's climate system and how do matter cycle and energy flow through the rock cycle?
08 August 2024 8,162 0 View
I have protein-membrane simulations (PDB, PSF, DCD) and have noticed that water molecules near the protein are not visible in the simulations. How can I fix this issue? Is there a way to place the...
04 August 2024 1,200 2 View
I have a .text file for various FASTA sequence , and i want to convert these sequences into a numeric file which will be in .csv format. OR I want to extract physiochemical properties(features)...
25 July 2024 3,650 2 View
Actually, I'm having trouble implementing the plot of the flutter region for the whirl prop system with 2 DOF (Influences of structural damping and propeller—pivot point distance on whirl flutter...
21 July 2024 5,047 2 View
Hi Everyone , I finished my Master's in Computer Science . I have work experince in IT services and learning cloud tech . I am not a good programmer (Can do if needed) . I like scripting...
10 July 2024 267 0 View
Hi everyone hope your all doing good. I’ve been looping my scripts and am trying to take a cut line of the conduction band energy with respect to y for each loop. Basically, I want to take a...
03 July 2024 9,134 1 View
I am trying to run my tcl script for NAMD. Running separate MD simulation for each forward and backward runs. Forward run is fine however backward.inp abruptly terminates showing output only till...
17 June 2024 861 1 View
Hi, I am calculating the periods of a steel building modeled as a 3D moment frame. Is there any script to display the shape of vibrating of the model in opensees?
12 June 2024 8,065 1 View
I want to extract mid-latitude, high-latitude, equatorial region from ionex winrar archive file. I need the script.
04 June 2024 2,644 1 View
Hi all, Is there anyone possessing the experience of coding DFT scripts (by solving Kohn-Sham equation)? Recently I try to code one for a hydrogen atom array which is periodic in space (one...
04 June 2024 8,223 4 View
I want to calculate τ-Random Acceleration Molecular Dynamics (τ-RAMD) Simulation using NAMD/VMD software? Kindly provide input parameters that are essential to run these simulation. I will be very...
31 May 2024 2,662 2 View