Hi. How can I create all indexes in a dist.xvg file in Gromacs?To analyze the distance and rmsd links, I want them all to be created in one chart.!?

More Arash Papi's questions See All

What are some reliable methods to measure the concentration of H2 gas at ppb levels?

We'll have vials in which we expect H2 generation to occur. Over the first few days, the amount of generated H2 is expected to be at ppb level. GC (+ TCD) detector is best when your H2 level is...

18 June 2024 254 3 View

Earthquake time forecast!!! Is the source of the earthquake from the ground? Is the source of the earthquake from the sky?

Earthquake time forecast!!! Is the source of the earthquake from the ground? Is the source of the earthquake from the sky? I will reply in 24 hours, but I would like to know your opinion.

02 May 2024 6,676 12 View

Is the Sun's core now working on nuclear fusion?

According to my research: the core of the sun is formed among gas masses. The formation of nuclei is initially by nuclear fusion. The collision of nuclei creates larger nuclei. When the volume of...

16 April 2024 1,332 2 View

Is it possible to use sodium polyphosphate instead of sodium hexametaphosphate when measuring soil texture?

Is it possible to use sodium polyphosphate instead of sodium hexametaphosphate to measure soil texture? How and in what concentration?

06 April 2024 5,805 5 View

What are some reliable sources to obtain pure mineral specimens?

I need specimens of some minerals in order to carry out experiments aiming to decipher fluid-rock interactions at different compositions and PT conditions. The challenge is that mineral phases...

22 March 2024 6,347 0 View

Is there any paper claiming that the creation of holes in electrodes has either no effect or a very negligible effect on the removal efficiency?

I am looking for papers that have investigated this topic and have claimed that the creation of holes in electrodes have almost no effect on the efficiency of contaminant removal in the...

15 March 2024 1,404 0 View

HI everyone. I want to how to create a good dispersion with poly(glycolic acid) (PGA) and what is the best way to reduce the shrinkage in PGA films?

PGA solvents are toxic and I need a better approach to create films with this polymer. In advance, Thank you for you time and consideration.

29 February 2024 6,145 8 View

Which Functional Unit should be defined for LCA of a RVM?

Hello guys, In conducting a gate-to-gate LCA for a reverse vending machine (RVM) that collects plastic bottles and metal cans with a boundary spanning from the assembly of the RVM, placing...

18 February 2024 7,490 2 View

A549 cell line ?

Can anyone tell me or give me a good article in the context of A549, its setup, passage and troubleshoot? Thanks

04 February 2024 1,608 3 View

What are some credible and affordable Qualitative methods for independent researchers who intend to collaborate by using their research proposals?

Greetings, I was wondering what are some qualitative methods that: 1)are credible globally (considering there are many qualitative methods) 2) can be performed with the least budget but can also...

31 October 2023 9,188 3 View

How do I replace a file with a more recent version of a paper that was uploaded to ResearchGate?

The paper in question is "Interpolation of Nitrogen Fertilizer Use in Canada from Fertilizer Use Surveys". This paper was very recently published by Agronomy (MDPI). Agronomy has, in the last day...

07 August 2024 9,934 3 View

How to solve g_mmpbsa error?

Program: g_mmpbsa, version 2024.1 Source file: extrn_apbs.cxx (line 152) Fatal error: Failed to execute command: $APBS pybYcUWA.in --output-file=pybYcUW.out

07 August 2024 6,066 0 View

Gromacs first step of minimization ?

I have face this problem anyone help me how to solve this issue ?which is below Fatal error: There are inconsistent shifts over periodic boundaries in a molecule type consisting of 78 atoms. The...

07 August 2024 2,598 1 View

How do you delete a duplicate pdf for the same paper on ResearchGate?

The first pdf file I uploaded had an error. So I uploaded an updated, corrected pdf of that paper with a different pdf name. I dpon't want the old copy to be download or read.

07 August 2024 9,508 1 View

AUX gas reading problem on QE with full MS and PRM method in one run?

Dear QE-users, In the method where full MS positive mode and PRM mode are used, we always get an incorrect auxiliary gas reading (41 instead of 25). This only happens in this method; other...

06 August 2024 4,953 0 View

JCPDS 65-7246 file please?

Dear Researchers Kindly share JCPDS 65-7246 file Thanks in advance

04 August 2024 5,613 1 View

Dirty and clean?

Hi everyone I need a file with a dirty and clean potato image

04 August 2024 7,199 4 View

How to change the version of the article full-text pdf file?

How to change the displayed full article text to its corrected version? In the file on the page of the journal where I published the article, there was an error in the text, the table is...

30 July 2024 3,229 2 View

Difficulty with permittivitt and Magnetic Permeability Calculations?

Difficulty with permittivitt and Magnetic Permeability Calculations Hello everyone, I have all the parameters related to the calculations of the permittivitty and magnetic permeability...

30 July 2024 5,206 1 View

How to do pca analysis of c-alpha atom of the protein?

i m interested in pca analysis of c-alpha atoms in gromacs for that i used the following gmx_mpi covar -s mdca.tpr -f mdca.xtc -o eigenvalca.xvg -v eigenvecca.trr -av average.pdb -n index.ndx but...

30 July 2024 1,607 1 View