After running my previous simulation yet again after making some minor changes during NPT equilibration, I've attached here with my plots for RMSD. The RMSD plots look promising, but still can't make sure whether RMSD is converging or not, because during last (80-100 ns), the RMSD looks like increasing a bit. Also, is it fine if I extract trajectory for 30-100 ns since the system looks like equilibrating for this region ?