GATK 3.8 is not working and difficult to find command line for GATK4 can anybody help me with it?

18 December 2019 1 8K Report

I am analysing Whole exome sequencing data using GATK but GATK 3.8 is not working , also I am unable to find commands for GATK 4, Could any one suggest or share pipeline for WES analysis Pipeline.

Sureshkumar v.

Bipin Raj Shekhar

Try this https://github.com/gatk-workflows/gatk4-exome-analysis-pipeline

Let me know the tool which you want to use in gatk. Then I can give the command.

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