Hi Everyone, I want to extract features from proteins 3D structures. Can anyone suggest a methodology, software or server to carry out this process?
Thanks in Advance.
Hi everyone, I am installing gromacs(2019) on my desktop. I could successfully install gromacs but when building mpi version it shows the following error. I have applied all the possible ways,...
04 May 2019 6,559 5 View
30-50% of MS spectrums are detected from Tissue or Cell samples are unmatched with the available protein sequence database? Can anyone suggest a methodological flow for this problem. Thanks!
09 October 2018 7,191 3 View
Hi Everyone, I'm using microarray data to identify DEGs and map its PPI network but now I want to use multiple datasets reported by different studies in Acute Myeloide Leukemia (AML). Please...
02 March 2017 7,637 7 View
Hi everyone, Hope you will be doing well. I'm new in the field of simulation and using Gromacs. , I appreciate your efforts the way you provided step by step tutorials. , I'm simulation a protein...
01 February 2017 3,619 1 View
Residue 97 named ARG of a molecule in the input file was mapped to an entry in the topology database, but the atom CG used in that entry is not found in the input file. Perhaps your atom and/or...
01 February 2017 4,225 1 View
After completing MD the following error is showing again and again. Anyone please. Error: Could not set up parm file prmtop for reading.Error: Could not open parm prmtop CPPTRAJ: Trajectory...
10 November 2016 7,422 9 View
When I am entering energy minimization command "Pmemd.cuda" it is showing Pmemd terminated abnormally. what could be the possible solution? In Molecular Dynamic Simulation this problem is...
05 June 2016 5,864 6 View
can anyone let me know about the publishing fee of Journal of Medicinal Chemistry?
31 December 2015 8,786 3 View
I want to build Homology model of a protein whose sequence length is 3390 amino acids. Please let me know is it possible to build the homology model of such a large protein and if so how far we...
31 December 2015 7,694 7 View
RMSD is usually taken as below 2 but if the length of Proteins is too high or large, is it affect RMSD or not? if, then how much it vary from sequence to sequence
11 December 2015 7,907 3 View
Hello, I am currently having problems with RNA extraction. I am using mouse liver (C57BL6J), and I have extracted RNA from mouse liver before. Before this experiment, my final RNA pellets were...
11 August 2024 7,082 3 View
I have been doing the m6A dot blot for a while with no improvement, I am extracting the RNA, and I can see the dots although the three biological replicas give a different reading on the memberan...
10 August 2024 8,539 5 View
How can I use the cif data obtained from rietveld refinement extracted via gsas2, for microstructural analysis using ETEX software?
09 August 2024 7,718 0 View
I've been performing RNA extraction on cotton petiole tissue for a few months now using the method described in the following paper, a derivative of the typical hot borate method...
08 August 2024 9,882 2 View
Dear fellow researchers, I am currently working on a paper where I need to provide a reliable reference that defines and distinguishes between 3D mesh models and 3D city models. Although I am...
06 August 2024 9,986 2 View
Palmitic acid presence in aqueous fraction
05 August 2024 8,624 4 View
I am having an issue with my gel image where my PCR product is not appearing very bright on the gel. When I perform gel extraction, the A260/280 purity value is very low. I used the Qiagen gel...
05 August 2024 9,798 3 View
I am seeking experimental or applicable data for the liner (LLDPE) interface in FLAC3D numerical modeling of a large stockpile. Could you please recommend suitable references? The preferred data...
05 August 2024 3,665 0 View
I will be with my students collecting seaweed samples in a marine farm and later we will process this tissue for RNA isolation and further sequencing. Does anyone have tips on how to collect the...
04 August 2024 501 2 View
HOW CAN I WRITE A CODE TO USE THE WAVENET TRANSFORM AS A FEATURE EXTRACTION METHOD INSTEAD OF DWT IN MATLAB?
03 August 2024 7,829 0 View