Does anyone know how to predict SNPs in a particular gene?

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Jens Allmer

LOL, with 7 billion humans, any nucleotide in the human genome is statistically differentially expressed in some humans. This is probably similar for any other genome.

I suggest, you review when an SNP is accepted to be a true SNP. Then you may be able to make any conclusions in respect to your gene of interest. If working in human, have a look at the 100000 genomes project at Haward.

Sathya B

Thank you sir.

I have predicted SNPs using SAM tools . It lists many thousands of SNPs. Now I need to know the SNPs only in the specific gene (position is known).

Could you tell me how to validate the true SNPs from false one.