The methodology of sampling of aquatic macroinvertebrates in running waters is mainly developed for small size wadable rivers (e.g. AQEM). The up to date methodology of quantification of all groups of macroinvertebrates is not confident enough in the case of large rivers (especialy very large rivers, such the Danube in its middle and lower course), since the research is focused mainly on shallow bank region. The particular problem is with quantification of molluscs (especialy larger taxa, such as mussels), having in mind the distribution within the sampling stretch -spatial and temporal dynamics.