I am trying to dock a small molecule to G-quadruplex but I have some technical difficulties preparing the grid, the dlg file shows a fatal error due to the grid preparation parameters. Thank you in davance.
Rebwar M.Rashid
I have used gastiger charges. But I was wondering if all the protein chains are necessary 'both protein and DNA' chains. And as well as the grid dimensions.
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Mohammadreza Aallaei
You do charge calculte by UCSF Chimera ;So Culculate charge prepare for dock.
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Rebwar M.Rashid
@mohammadreza aallaei, thwnk you very much, I am not using chimera fir docking. I am using autodock vina. And prepare molecules by autodock
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