In plagiarism check, appendix is often excluded and questionnaire is often under appendix. However, it depends on the policy of the institution where your work will be submitted. Questionnaire can be plagiarized but once your supervisor checks for its validity and reliability, it ought not to go for plagiarism test again.
In simple terms, although questionnaire can be plagiarized, it doesn't go through plagiarism test except the policy of your institution says otherwise.