Hello,
I used to work on gliomas and used several websites for RNA-seq such as Gliovis, geoprofile GDS1962 and many others to explore the mutation and the differential expression of genes in gliomas subtypes. Currently, I started working on lung cancer and I need to perform the same analysis of the gees expression in different lung cancer (adenocarcinoma) subtypes. Does anyone has an idea about a good website to extract the datasets that I want?
Thank you
I'd start with the cancer genome project, which certainly includes lung cancer datasets. You can do basic analyses with the UCSC Cancer Genome Browser, or their updated Xena software, or with CBioPortal.
Check UALCAN for TCGA datasets
http://ualcan.path.uab.edu/analysis.html
You can obtain expression level of genes in TCGA lung adenocarcinoma[LUAD] and lung squamous cell carcinoma [LUSC]
Article UALCAN: A Portal for Facilitating Tumor Subgroup Gene Expres...
You can explore these
https://www.ebi.ac.uk/gxa/experiments/E-MTAB-2770/Results
and also the nexus database may contain all about what you mentioned
http://syslab4.nchu.edu.tw/
you can also try this
http://hcmdb.i-sanger.com/index
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