I am putting together a short proposal for a project involving undergraduate students for next summer.
Will that help you?
http://www.amazon.com/Amphibian-Ecology-Conservation-Handbook-Techniques/dp/0199541191
Perhaps this link will help as well?
http://armi.usgs.gov/
This type of resource is focused on the type of general project that you are describing.
http://www.amazon.com/Ecological-Census-Techniques-A-Handbook/dp/0521606365
There are also some sources specific to certain species, etc.
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