There are issues with conjugation phase II but I am focused on intestinal bacterial role. The markers could include catechols, flavanols, flavonols. Particularly pyrogallol and pyrocatechol and in urine and serum.
Determination of Cranberry Phenolic Metabolites in Rats by Liquid Chromatography–Tandem Mass Spectrometry: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3165050/