Please how do i go about this assigment assesment for my M.sc using Phyton
I have attached the file for the BAM File
Two sample outputs from the bedtools command, stating the coverage at each position in the genome.
A file that states the start and end position of every gene in the reference genome.
The Problem
The task is to find each gene that has been deleted in each sample (i.e. >90% of positions in that gene have a coverage of
Qamar Ul Islam
Akintunde olutayo Sunday To compare the BAM files, the genome is divided into equal-sized bins, the number of reads discovered in each bin is tallied per file, and a summary value is returned. The ratio of the number of reads per bin, the log2 of the ratio, or the difference may all be used to get this value.
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