Atom type vanadium not included, is there a way to use it in AutoDock vina?

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I am carrying out an experiment on Trichoderma. How can I measure OD of the fungal growth after 7 days?

I am carrying out an experiment on Trichoderma and need to measure OD of the fungal growth after 7 days. Unlike bacteria, fungus clump together making It difficult to get OD for the fungal growth....

11 July 2024 6,251 1 View

What does Habitat Occupancy mean? How to calculate Habitat Occupancy for a small animal species?

I want to assess the habitat occupancy of a small species in a habitat. What should I collect as field data to assess its habitat occupancy?

06 February 2024 9,039 4 View

Why has development cooperation been less productive in less developed countries?

Is it because of the weak governance of the recipient countries or the hidden interests of the development partners that influence the policies?

28 December 2023 378 3 View

How can I access it to publish my article?

I want to publish my academic article in this journal. How is it possible?

26 December 2023 421 4 View

What is the specific impact of microsatellite marker analysis on unraveling the genetic diversity and population structure of sheep in Nepal?

What is the specific impact of microsatellite marker analysis on unraveling the genetic diversity and population structure of sheep in Nepal, and how does this information contribute to the...

26 November 2023 3,797 0 View

Why Big Data are to be secured? Is it any threat to National Security?

Data Security Big Data

14 August 2023 2,922 6 View

How to implement map reduce algorithm on hypercube network in matlab/ python?

Map reduce framework need to be implemented on hypercube network architecture in MATLAB or Python progeamming

14 July 2023 8,137 5 View

Topology file of PubChem CID 134149698 from swissparam?

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12 July 2023 8,282 0 View

Hi Researchers,Can we relate the earthquake and mushroom diversity or mycorrhizal diversity? If yes, How?

Can we relate the earthquake and mushroom diversity or mycorrhizal diversity? If yes, How? Thank you.

05 June 2023 2,078 2 View

Optimization using b3lyp in GAMESS?

Can anyone help me to set the input file for optimization runs in GAMESS? Any suggestions you can give. This is what I set.

07 May 2023 8,110 1 View

Can anyone provide me with molecular docking softwares/ websites?

Molecular docking software/ websites?

02 August 2024 8,704 7 View

How to add Cr parameter in autodock?

When I run autogrid4 it says: autogrid4: ERROR: Unknown receptor type: "Cr" -- Add parameters for it to the parameter library first! Look forward to your reply.Thank you so much!

29 July 2024 488 0 View

AutoGrid and Autodock 4.2.6 window opens for 1 second then closes and there is no output files?

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Is it possible to dock more than one drug in the same active site or pocket of a protein to study synergistic/antagonistic/additive properties?

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What is the main factor involve in higher binding score performing molecular docking?

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21 July 2024 954 5 View

In silico can we join two ligands for docking....?

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How to extract binding energy from pv.maegz file without using Schrodinger?

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18 July 2024 2,881 4 View

How to calculate theoretical Ki from the docking results?

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Why Cl atom is not showing in docked comlex of molecule?

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Can we analyse RMSD for peptide-HLA docking and binding affinity for peptide-HLA to TCR docking, in a peptide-HLA-TCR docking ?

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Mario E. Valdés-Tresanco

Jhashanath Adhikari check our tool AMDock... you can add custom atoms to the force field file in Autodock

https://github.com/Valdes-Tresanco-MS/AMDock-win/wiki/4.5.3-Input-a-customized-AD4-parameter-file

hope this helps!

Jhashanath Adhikari

Thanks for the insight Mario E. Valdés-Tresanco. SA