" ATOM syntax incorrect: "B" is not a valid AutoDock type. Note that AutoDock atom types are case-sensitive " How do I solve this error?

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Yoshinobu Ishikawa

Hi Shawn,

Can you upload the .pdbqt files of ligand and protein?

Ricardo J Ferreira

Hi,

if I am not mistaken, boron is not included in the Autodock database. You must manually add it in order to use boron in your dockings.

Mohammed Er-rajy

how did you manually add the boron for use in the dockings?

and thank you

Ilemobayo Victor Fasogbon

TRY THIS

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2702476/pdf/nihms118618.pdf/?tool=EBI