While using charmm-gui, there seems to be some error which i have no answer
Hi Suraj,
yes, there is.
You can check QwikMD (part of VMD) http://www.ks.uiuc.edu/Research/qwikmd/.
You plug in your pdb (or psf+pdb) file and it can assist you to generate the input files for NAMD.
However, may check the log of charmm-gui or namd to find out what is happening. The NAMD mailing list archive is a good place to find to support.
Kind regards
Suraj Pukhrambam You can try Article Gmx_qk: An Automated Protein/Protein-Ligand Complex Simulati...
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