Analyzing microarray data

More Lilach Toker's questions See All

Does anyone know what "xbb1" stands for?

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What is the most suitable server for predicting protein structures in bacteria?

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Has anyone tried to scan fluorescence IHC slides with microarray scanner?

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Is there a Constitutive model for concrete with Sea-Sand?

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Benjamin I Laufer

There isn't a 'best' way to do that yet, although this paper seems like it might help out.

http://genomebiology.com/2003/4/11/r76

C. S. Mukhopadhyay

Hi there,

the easiest, cheapest and practically very much feasible for any researcher is the using the R package WGCNA.

URL for Tutorial on WGCNA: http://labs.genetics.ucla.edu/horvath/htdocs/CoexpressionNetwork/Rpackages/WGCNA/Tutorials/

What you need is: knowledge in R, a brief introductory practice of WGCNA to use the modules and a computer of general configuration (Any O.S.)

The other method is using LIMMA package of R.

Best