according to the Encyclopedia of Biodiversity taxonomy is "Classification of species and higher taxa, ultimately based on phylogeny".
Systematics is practically considered a synonym for the term 'taxonomy' and there is know entry for systematics in EoB glossary, but instead there is a more thorough article on the subject.
In my opinion, systematics is a wider term, which can include more than just classification of taxons, but I don't think that much effort should be wasted in making a difference between these two, although the root of the words is different: TAXOnomy vs. SYSTEMatics. Both words refer to classification of concepts.
I hope this helps.
Citations:
Levin SA (Ed.) (2001) Encyclopedia of biodiversity. Academic Press, San Diego.
Wheeler QD (2013) Systematics, Overview. In: Encyclopedia of Biodiversity, pp. 85–96. Elsevier.
I think that the term taxonomy means the classification of the flowering plants while systematic is a wider concept that includes fliwering and non flowering species, even the lower plant and animal taxa.
De Queiroz & Gauthier (1992) distinguish between systematics (the reconstruction or estimation of relationships) and taxonomy (the branch of systematics concerned with the representation of taxa and their relationships in an ordered system).
Others, such as Wheeler (2008), use the term taxonomy in a much broader sense, including for what De Queiroz & Gauthier (1992) would call systematics.
Both viewpoints have merits. Needless to say, taxonomy and systematics are closely connected: you cannot do a meaningful phylogenetic analysis without sorting out the taxon names of your samples/specimens (and vice versa). Still, I like De Queiroz & Gauthier's version because it reflects the dichotomy I see in the literature: papers that are either phylogenetic or taxonomic are more common than papers that are both. Many new phylogenetic studies do not propose taxonomic changes. There might be good reasons for this. Not every systematist is skilled in nomenclature, and sometimes it is better to wait until there are multiple sources of evidence (or multiple papers) before a taxonomic revision is proposed.
These are not the only viewpoints. There is an extensive discussion of the use of these terms in Minelli (1993). (Ironically, ResearchGate classifies user's requests to identify an organism under the heading 'Taxonomy', something most of us would call 'identification', rather than taxonomy per se.)
de Queiroz, K & Gauthier, J 1992. Phylogenetic taxonomy. Annu. Rev. Ecol. Syst. 23: 449-480.
Minelli, A 1993. Biological systematics: the state of the art. Chapman & Hall, London.
Wheeler, QD 2008. Introductory: Toward the New Taxonomy. In: Wheeler, QD (ed). The New Taxonomy. Systematics Association Special Volume Series 76. CRC Press, Boca Raton, pp. 1-17.
Systematics - Science that deals with the organization, characterization and denomination of taxa and the establishment of their phylogenetic relationships. The identification and classification of forms is also a task for systematicians. Systematics can be devided into two branches: Taxonomy and Nomenclature.
Taxonomy - The branch od Systematics that deals with the organization, definition and arrangement of the groups.
Nomenclature - The branch of Systematics that deals with the definition of the rules to organize the names of taxa.
I do not think there is a difference between systematics and taxonomy: since the early 19th century, systematicians have always tried to find the "system" in nature, caused by evolution. The methods to "reconstruct" the evolution have evolved, and since the 60-ies we started to use cladistics. Our hypotheses of the phylogeny (based on a strickt methodology !) is reflected in a cladogram. As far as I know, the term "taxon" was introduced by Hennig for a group of species of common descend. So Systematics and Taxonomy have exactly the same goals (see also the comment of George Sangster). But it is thru that the taxa which appear in the cladogram do not always receive a name. George is right when he says that not "not every systematist is skilled in nomenclature", but I think there is another reason. When using molecules for the phylogenetic analysis, one does not need to know much about the animals used in the analysis; so authors are not always enough familiar with the taxonomy of the group...
There is a good paper on integrative taxonomy by Dayrat 2005 Biological Journal of the Linnean Society. Basically, it talks about the evidence and techniques to be used in order to properly perform taxonomic changes using tools like proper morphological comparisons and phylogenetics (which was not always the case).
Good point, Robert! To quote my old teacher, the late Professor Lucien De Coninck (famous nematologist) in his course on "Theoretical Systematics" in the early 60-ies of past century: "Systematics is the queen of biological sciences since you have to consider all possible characters of the species you are working with". Morphological characters remain crucial: what taxonomists sometimes forget is that the system they propose must be useful to non-taxonomists (e.g. ecologists, physiologists, etc.). I am not sure DNA-bar coding can replace morphology (completely). It is however nog always easy to discover good morphological feature that characterize a taxon (= a node in the cladogram).
In my opinion the most systematic definition of Systematic is what emerges from the scheme proposed for Stuessy in his book Plant Taxonomy. In this scheme it raises the Systematic integrated of three components; Taxonomy (including nomenclature, identification and classification), Evolutionary processes and Phylogeny. Of course, if we see the history of these terms, have been considered synonymous; but concepts must evolve and adapt to new realities. At first it was pointless to distinguish systematic and taxonomy, but with the developing of evolutionary theory and contemporary broad development of the discipline, I think that the scheme of Stuessy is the most informative.
Perhaps you could also find interesting elements in the references below, particularly for the main principles in taxonomy and to follow the way of the integrative taxonomy.
WINSTON J.E., 1999. – Describing species: practical taxonomic procedure for biologists. 518 p. New York: Columbia University Press.
QUICKE D.L.J., 1993. – Principles and techniques of contemporary taxonomy. 311 p. New York: Blackie Academic & Professional.
SEBERG O., HUMPHRIES C.J., KNAPP S., STEVENSON D.W., PETERSEN G., SCHARFF N. & ANDERSEN N.M., 2003. – Shortcuts in systematics? A commentary on DNA-based taxonomy. Trends Ecol. Evol., 18: 63-65.
MEIER R., 2009. – DNA sequences in taxonomy: Opportunity and challenges. In: The new taxonomy (Q. Wheeler, Ed.). pp. 95-127. New York: CRC Press.
PIRES A.C. & MARINONI L., 2010. – DNA barcoding and traditional taxonomy unified through Integrative Taxonomy: a view that challenges the debate questioning both methodologies. Biota Neotrop., 10: 339-346.
If you want to know what Mayr and Ashlock said, here it is (from their glossary):
Systematics: The science dealing with the diversity of organisms; "the scientific study of the kinds and diversity of organisms and any and all relationships among them." (Simpson, 1961)
Taxonomy: The theory and practice of classifying organisms (cf. classification, systematics).
Taxonomy is an all embracing term and includes three levels: alpha, beta and gamma. It therefore includes the everyday practice of identifying, naming and describing organisms (alpha taxonomy), classifying organisms into ordered groups (previous/new) (beta taxonomy), and determining any/all relationships amongst them by using various criteria - morphological, molecular, behavioural, biochemical, etc.(gamma taxonomy). Systematics is bringing to order the complexity of life, to make this order available to science and the public at large, and determining relationships amongst taxa. Hence there is no difference between the terms taxonomy and systematics although some authors prefer to restrict the term systematics for the gamma branch of taxonomy alone.