I am trying to do geometry optimization calculation of a mononuclear coordination complex. I am trying to do alignment of the complex in arguslab (a supported service pack for molecular coordinates) which generated Z-matrix filename .xyz file before GO calculation. Now in command prompt through Babel software I am trying to align the coordinates of the molecule in a particular direction for proper geometry (Octahedral/sq. planar etc). Unfortunately I am unable to do that in command prompt. Could anyone suggest the commands in command prompt and related things in doing this alignment by babel or babel 16 or even in openbabe supported service?