Yuxin Hu

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Questions related from Yuxin Hu

Does KEGG or MetaCyc provide a batch search or bulk search feature?

Hi! Now I have 500 enzyme ECs and I want to figure out which pathway each EC belongs to. One option is that I can click the search button 500 times, but I'm wondering if there's any batch query...

27 December 2023 3,689 0 View

Is there any tool to batch convert chemical names to SMILES?

Hi. Now I need to get the SMILES of ~1000 chemicals but I only have their names (e.g., ethanol). The only way I know to generate SMILES is from PubChem but I can only make 1 query at a time. Doing...

26 September 2023 9,695 4 View

What is E.coli 23s rRNA numbering and how to number the mutations?

Hello! I got the 23s rDNA of my enterococcus strains and found some skeptical mutations. Now I'm trying to number it like G1234T. I read from some documents that E.coli 23s rRNA numbering is...

12 April 2022 2,548 1 View

How to know whether the gene is located on a plasmid or chromosome without extra wet lab experiments?

Hi! I've got the result of bacterial whole-genome sequencing, but it is not integrated into a complete linear sequence. Now I want to know whether a gene is on a plasmid or on a chromosome, and if...

25 March 2022 289 1 View

What's the difference between HMP database and HUMAnN database?

I read some papers mentioning that they used the HMP reference genome for protein homology search and I've also read about the HUMAnN database elsewhere. I'm wondering what's the difference.

01 January 1970 5,757 3 View