Saruby Sharma

2 Questions 3 Answers 0 Followers

Questions related from Saruby Sharma

What is the basis of color coding proteins according to Spectrum => rainbow (no specification like residue, or ss)?

I understand that the protein is colored from N to C terminus starting with blue, till red. But what is the basis for the segmentation in coloring? It is not based on secondary structure, since a...

31 August 2020 2,890 1 View

Why is Pymol unable to correctly predict H-bonds? Is there any other visualization software that correctly predicts H-bonds (based on a PDB input)?

The typical lengths of H-bonds in proteins is: 2.2-2.5 Å (strong), 2.5-3.2 Å (moderate strength) and 3.2-4.0 Å (weak). However when i tried visualizing H-bonds in Pymol with various pdb files as...

18 August 2020 6,013 10 View