Samaneh Fazeli Farsani

4 Questions 13 Answers 0 Followers

Questions related from Samaneh Fazeli Farsani

Why we achieve different values for the same descriptors (descriptor selection in QSAR modeling) in different formats?

Hi guys I have a question related to descriptor selection for QSAR modeling. We are using a software called PADEL for calculation of 2D and 3D descriptors. We can import our molecules in different...

06 June 2016 6,817 8 View

Does anyone have experience with meta-analysis of microarray (and RNA-seq) data by R packages like MAMA?

Hi guys I am going to do a meta-analysis on microarray and RNA-seq data sets by R software. Anyone has working experience with MAMA package or another R packages for meta-analysis? And another...

01 January 2016 2,984 10 View

How can I get 2D and 3D descriptors using PaDEL-descriptor Software?

Hi guys, I am going to get 2D and 3D descriptors using PaDEL-descriptor Software. I have uploaded 23 molecules in mol2 format and got whole descriptors. But there is problem with one of my...

08 August 2015 8,541 0 View

Does anyone have experience with Chimera software for RMSD calculation?

I am going to calculate RMSD between native (from PDB) and my docked complexes. I opened complexes in ArgusLab, removed their proteins, deleted all hydrogen (H) to have analogues with the same...

06 June 2015 1,329 10 View