Sajin A K

11 Questions 50 Answers 0 Followers

Questions related from Sajin A K

Can anyone help me with the milk standardization Calculation?

hi all, I want to mix sepcific quantity of Whole milk powder and skim milk powder to get required fat. Can any one help me with the calculation/ formula used for this? Thank You

07 March 2018 2,350 3 View

What is the exact formula for finding the density of milk using a pycnometer?

hi, what is formula for finding out the specific gravity of milk using density bottle or pycnometer ???? thank you

29 December 2017 1,181 3 View

Can anyone help with an error in AutoDock?

When I run autodock command, I am getting the following error? "Unknown ligand atom type "D"; add parameters for it to the parameter library first!" Please help me!!

07 May 2015 2,570 13 View

Can anyone help me with the confirmation of docked pose in autodock?

I am performing docking using autodock. In the procedure, am giving 35 GA runs. Normally we will select the first one from the 35 docked position which has the least binding energy. In my case,...

18 April 2015 711 9 View

Can we consider pi-sigma interaction in docked structures?

In my docking studies, am getting hydrogen bond, pi-pi interactions along with a pi-sigma interaction in the docked structure? Is the Pi-sigma interactions are good or bad? Please help me. Thanks...

12 April 2015 4,510 3 View

Any carried out Docking studies on Dengue Virus?

hi all, I am Doing docking studies on Dengue viral proteins of all the serotypes. If anyone carried out any docking studies on of Dengue virus 1,3 and 4, please let me know. Its urgent ...!!! I...

08 April 2015 7,462 1 View

While running the md run in gromacs, I get the following error, can anyone help me?

Fatal error:There is no domain decomposition for 4 nodes that are compatible with the given box and a minimum cell size of 6.75605 nmChange the number of nodes or mdrun option -rddLook in the log...

12 March 2015 1,068 10 View

Are hydrogen bonds necessary in a docked structure?

I am using autodock vina. After docking, when i analyzed the result ligand have a binding energy of -8.3 kcal/mol. But when i gone through the interaction, i couldn't find any hydrogen ...

04 March 2015 7,088 8 View

Is it necessary to remove ligand from protein before energy minimization?

I am doing a docking studies on viral envelope protein. For predicting the active active site for docking my experimental ligands, I am using a reference ligand in it. If I remove that ligand for...

06 February 2015 3,647 12 View

I would like to do a docking study on a protein for which no reliable structure is available. What bioinformatics approach I can take?

I am doing a docking study on viral protein. The protein structure which I downloaded from PDB is not reliable when I checked in the PDB validation tool. Can anyone suggest what approach I should...

06 February 2015 5,646 6 View

Can anyone suggest me a free energy minimization tool?

hi all, I am doing docking studies on dengue viral protein? is it necessary to carry out energy minimization for structures downloaded from PDB? Can anyone suggest any freely available software...

31 January 2015 8,806 13 View