Ryan Gourlie

5 Questions 21 Answers 0 Followers

Questions related from Ryan Gourlie

If template-switching during DNA replication results in a duplication (or triplication), is the resultant duplication always inverted?

I've read that template-switching can create duplications, but those duplications are inverted (aka TIDs - tandem inverted duplications). Can template-switching result in a non-inverted...

23 October 2023 9,379 7 View

How to transfer gene functional annotations to fasta headers?

I've used Pfam to output available functional information for predicted genes. I would like to transfer the annotations, specifically the 'hmm_name' column, into the corresponding gene or protein...

23 October 2023 8,737 0 View

Recent programs/pipelines for identifying microhomology and/or microhomology-mediated break-induced replication (MMBIR)?

I'm looking for a program or pipeline to aide identifying MMBIR and subsequent chromosomal segment duplication. I've found MMBIRFINDER on github, but it is quite old and not supported,...

16 August 2023 3,192 0 View

Geneious - Mauve - How to display sequence name and position?

In the original version of Mauve, when you scroll through the alignment it tells you the contig/chromosome your mouse is over and the exact position at the bottom of the window. The Mauve aligner...

31 March 2023 4,548 0 View

Associate single phenotype factor (non-numeric) to SNPs in Tassel?

How would one associate a single phenotype factor (binary presence / absence of trait) to SNPs in Tassel (v5.2.58) GUI? I generated VCF file using GATK and am able to import the VCF and...

08 April 2022 5,876 3 View