Rindra Rakotoarivony

4 Questions 7 Answers 0 Followers

Questions related from Rindra Rakotoarivony

Which plink file format the script plink2chromopainter.pl is really need to convert plink file to chromopainter?

I am working on GWAS and planning to use chromopainter, finestructure and globetrotter from plink. I am trying to convert plink 1/2 file format to chromopainter file by using the...

20 January 2018 8,726 2 View

Could anyone help me with Plink to treemix conversion?

Hi all, I tried to convert Plink file to Treemix file, I remarked that in the note at different websites you need to get a .frq file from using --freq --within flag in Plink. But the thing is that...

16 June 2016 4,265 7 View

Update SNP id and base pair position?

Hello, I red many documents and forum posts but I can not really find the exact way to update the SNP ID and Position before merging data file in Plink. I tried VEP, NCBI, UCSC. Does anyone know...

14 February 2016 2,644 1 View

GWAS Data Quality Control by individual relatedness and filter threshold in Plink?

Hi all, 1. I am working on a new dataset and test the relatedness of all individuals by using --genome flag in plink. Why in the result, all RT (relationships) are UNRELATED and the EZ (IBD...

24 January 2016 861 6 View