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Questions related from Raj Kumar Chinnadurai
Does the improper partial atom charge of the ligand have any effect on the MD simulation of the ligand protein complex? If so, will it will affect the calculation of potential mean force of the...
30 March 2014 6,573 4 View
I'm working with human osteosarcoma cell lines. I would like to know is there any morphological cues with which we can say the cell is undergoing differentiation? Apart from staining.
26 February 2014 2,734 2 View
Can anyone tell me, what is the principle behind cell fixation before any staining and also what happens to cell when we are treating it with the fixing agents like methanol, para-formaldehyde etc?
22 July 2013 5,356 8 View
Everyone knows that endogenous control is a yard stick for measuring the expression level of our gene of interest in control and treated samples. Do these endogenous controls vary during...
15 June 2013 6,675 3 View
How can I measure the formation of water mediated hydrogen bonds formed between a ligand and a protein complex during simulation. I'm using gromacs 4.5v. Is there any specific way by which we can...
26 December 2012 4,264 1 View
How can i measure the hydrophobic interaction between the ligand and protein using gromacs
17 November 2012 5,228 3 View
How can we calculate the ligand free energy binding for the trajectory obtained from gromacs ligand protein dynamics
07 November 2012 186 3 View
