Prathvi Singh

5 Questions 4 Answers 0 Followers

Questions related from Prathvi Singh

Is there a command in UCSF chimera to count the total no. of water molecules in a PDB file?

Can we also count, say the total number of alanine residues in a PDB file or any other other residue for that matter?

02 November 2021 8,564 3 View

Is there a way to covalently bond new atoms to existing atoms of a gaussian input file using commands?

I know how to use the Gaussview's user interface to add a new atom & create a covalent bond between it and an atom that already exists in a gaussian input file. But is there a way to do this...

21 October 2021 9,408 3 View

Is there any way to submit more more than one gaussian job using the "submitLinda" command in gaussian ?

I have a bunch of gaussian input files for performing single point energy calculations. The HPC facility at my institute allows submission of gaussian jobs via the "submitLinda" command. Its...

07 October 2021 2,101 3 View

How to embed BLASTP in my website?

I want to create a website in which I want to create a section in which a user can input a protein FASTA sequence & perform BLASTP search against a locally saved protein database. Can anyone...

27 August 2021 2,202 2 View

Which RMSD value to mention in the publication?

I am calculating the RMSD for two protein models using UCSF chimera's matchmaker command. However, it is showing two values (see the red box in the attached image): RMSD between pruned atom...

20 May 2021 5,309 2 View