Patrick Kunzmann

2 Questions 2 Answers 0 Followers

Questions related from Patrick Kunzmann

What are reasonable gap penalties for DNA and amino acid sequence alignments?

Hi, I am looking for reasonable linear and affine gap penalties for local pairwise alignments of DNA and amino acid sequences. I am using the NUC and BLOSUM62 substitution matrices from NCBI,...

30 June 2021 265 1 View

Is there a way to download GFF3 files from NCBI Entrez?

The NCBI Entrez E-utiliies documentation describes how to download genome annotations in GenBank format via their API. But is there a way to download a genome annotation in GFF3 format in an...

14 February 2021 283 1 View