Parviz Heidari

5 Questions 15 Answers 0 Followers

Questions related from Parviz Heidari

Why the AgriGO, panther and plant MetGenMAP give different results?

Many bioinformatic sites are for identifying Go enrichment but they (such as AgriGO, panther and plant MetGenMAP) give different results. Which one is the best for tomato? and why they give...

12 December 2015 7,737 2 View

How can I calculate the student's t-test by R?

We want to identify genes which have differential expression between sensitive and tolerant genotypes in RNA-seq data by R. Which package is suitable for our query?

12 December 2015 9,877 5 View

What is exactly the application of EDGE?

I know the estimate degree of gene expression (EDGE) method is a comprehensive approach that is suitable for data with or without replicate, and for both single group and multiple group tests. But...

12 December 2015 4,755 2 View

Is it necessary to confirm the RNA-seq results by quantitative RT-PCR?

We have RNA-seq data set and we selected some genes which involve in hormone pathways for verification the RNA-seq results but some genes are not in DEGs list. Could we report these results...

12 December 2015 4,891 8 View

Does anyone know how we can analyze or discuss SNP with RNA seq result together?

We have RNA seq results and also SNP results for this RNA. We want to know how we can discuss together and find correlation between them.

09 September 2014 5,942 4 View