Om Prakash Sharma

6 Questions 37 Answers 0 Followers

Questions related from Om Prakash Sharma

Can anybody suggest a tool to identify co-ordination bond and hydrophobic interactions influenced by metal ions?

I have modeled a protein and ligand complex with divalent metal ions. I want to find various types of interactions influenced by metal ions. I used ligplot..but it is showing only co-ordination...

11 November 2013 6,562 3 View

How to identify potential target protein of any novel small compound in target fishing?

I have synthesized some small molecule. I searched in PubChem, there is no similar structure found in Pubchem database. How to identify the potential drug target for the newly synthesized small...

07 July 2013 1,562 7 View

Does any one knows how to do do_dssp in gromacs?

I copied dssp executible from http://swift.cmbi.ru.nl/gv/dssp/HTML/distrib.html and saved in /usr/local/bin/dssp folder. and run the command /do_dssp -f ions2.trr -s ions2.tpr -na -o dssp.xpm i...

01 January 2013 4,853 2 View

Can anybody suggest a virtual screening software for proteins and ligands other than Schrodinger and AutoDock Vina?

01 January 2013 504 5 View

How to do do_dssp in Gromacs4.5

I have downloaded dssp.exe file from http://swift.cmbi.kun.nl/gv/dssp/ and bopied in my /usr/local/bin folder. and trying to run command do_dssp protein.xtc -s protein.tpr -o protein.xvg I am...

10 October 2012 9,666 12 View

What can I do with purified proteins?

I have purified one membrane protein for protein crystallization. I am refining the conditions for crystal. What else can I do with this purified protein? I am searching for some new approaches or...

10 October 2012 9,927 19 View