Navonil De Sarkar

9 Questions 49 Answers 0 Followers

Questions related from Navonil De Sarkar

Is there a tool?

Is there a tool that can help me to identify chromosome and coordinate of mutations formatted...

04 September 2015 4,944 2 View

Can anyone provide a *.bed file human exome?

To be used in Genome MuSIC.

16 April 2014 1,134 1 View

EdgeR pipeline for a differential expression?

For a differential expression with CPM, what should be the fold change cutoff for considering the expression deregulated?

20 February 2014 2,361 10 View

Can any one suggest some document discussing the reason for mRNA degradation in stored RNA samples?

Expecting links for technical reports, papers, book link etc

10 December 2013 1,351 4 View

Any suggestions for a pipeline for calling variants from RNA-seq data?

Especially choice of aligner, different cut offs, whether to do duplicate removal cause RNA seq libraries are enzyme cut libraries, minimum depth of coverage for variant calling, rare allele...

10 December 2013 3,783 6 View

Can someone suggest the minimum concentration of total RNA that would be acceptable for any expression study using rtPCR?

Please share your experiences

30 July 2013 249 1 View

Need suggestions for expression database

Head and neck miRNA and mRNA expression deregulation database. Aware of TCGA. Want know about others.

12 July 2013 5,098 2 View

RNA isolation protocol from Serum/Plasma

I need a suggession for a good RNA isolation protocol from Serum/Plasma. Looking for any kit name of any modification of protocol etc

05 February 2013 1,149 12 View

DeNovo Assembly

Num. reads assembled: 1669184 Avg. total coverage: 16.60 Number of contigs: 13991 Largest contig: 112360 N50 contig size: 1171 that is the summary I got out of a de novo assembly (ion torrent...

04 December 2012 2,544 12 View