Mohit Kumar

4 Questions 3 Answers 0 Followers

Questions related from Mohit Kumar

Is there any other server apart from CPORT to predict active and inactive residues of proteins?

CPORT is algorithm used for to predict the active-passive residues of protein. But now the server is under maintenance. Is there any other server apart from CPORT to predict active and inactive...

14 May 2023 8,117 0 View

How i can calculate the percentage of secondary structure composition in the protein pdb?

Is there any webserver or software thorough which i can calculate the percentage of secondary structure ( % of alpha helix, % if beta sheet etc). Other than Gromacs which require xtc file. I...

10 May 2023 6,160 3 View

Error in Designing of Pharmacophore from protein-enzyme complex using ligand scout. How can I solve this error?

Hii all We are using Ligand scout for pharmacophore modelling. I want to design a Pharmacophore from an enzyme-protein docked complex. Enzyme has an inhibitory action on this protein. I wish to...

09 October 2022 580 0 View

How can I calculate H bonds using VMD for protein protein?

Hello I did 100 ns simulation using GROMACS a protein protein complex ( chain A for antigen - chain B & C for antibody) now I want to calculate the number of hydrogen bonds. I select chain A and...

18 March 2022 634 5 View