Mohamad Koohi-Moghadam

5 Questions 13 Answers 0 Followers

Questions related from Mohamad Koohi-Moghadam

What is the best approach to screen co-expression of a list of genes in diffrent bacterial strain?

Hi, I am wondering what is the best experiment (cheap and fast) to screen co-expression of a list of genes in different bacteria strains? Lets say, we have around 100 bacterial strains and for...

11 August 2020 7,705 3 View

What criteria is needed to consider one amino acid as hot spot?

As I checked some papers like the following one, the authors consider an amino acid as hot-spot if mutation to the alanine change the DeltaDeltaG > 2 kcal/mol. Protein-Protein...

22 October 2019 6,389 1 View

What is the cheapest and fastest experiments to find protein-ligand interaction?

Dear friends, We have a bunch of small molecules (around 20) and purified protein as potential target. I am wondering what is the fastest and cheapest experiments to find if there is any...

03 October 2018 4,604 27 View

Is there any standalone tool to produce CHARMM force field for small molecules to use in GROMACS?

As far as I know, the following webserver can be used to find the CHARMM force field for small molecules for use in GROMACS http://www.swissparam.ch/ I am wondering if there is any standalone...

09 December 2016 923 4 View

Is there any computational tools to study interaction between small molecules and metal ions?

Hi all, Is there any computational tools to study interaction between small molecules and metal ions? I want to know if a small molecule can be a metal chelator or not? Actually I want to find a...

02 January 2016 569 4 View