Minal Jamsandekar

4 Questions 1 Answers 0 Followers

Questions related from Minal Jamsandekar

Same log likelihood values for site models in PAML?

Dear All, In CODEML, I am facing a problem with log likelihood values. I get exact values for M1 and M2 site models while nearly same values for M7 and M8 . I tried changing the parameters such as...

01 January 2017 7,666 2 View

How to get a graph for dN/dS ratio in JCoda for more number of sequences?

Hi there, I want to carry out the selection analysis of 43 sequences using JCoda v1.4. But for these many sequences, the graph doesn’t fit in one page and there is no option for moving the page...

06 June 2016 8,742 1 View

From the MrBayes tree output files, which trees other than .con.tre file can be used?

Hello everyone, I am a very new user of MrBayes 3.2. Please help with my doubt. I have constructed a phylogenetic tree of 43 sequences using MEGA and MrBayes. I have attached both the files here....

06 June 2016 7,440 3 View

What is the limit of sequence data for PAML?

Hello everyone, I have read articles published in good journals which have used PAML for phylogenetic analysis with around 100 sequences. But in PAML manual, it is written that PAML should not be...

02 February 2016 4,996 3 View