Mehmet Veysi Cetiz

3 Questions 6 Answers 0 Followers

Questions related from Mehmet Veysi Cetiz

Which Tools Should I Use to Identify Activated or Suppressed Pathways from qPCR Data?

I’ve got gene expression data from qPCR, and I’m looking to identify which biological pathways are activated or suppressed in my cell line. I’ve already sorted out the fold change values and...

18 December 2024 6,606 2 View

Optimizing Drug Candidate Selection After Virtual Screening: Tools and Strategies for Managing Large Datasets?

Let's say I conducted a virtual screen and obtained data on 27 proteins with binding energies of -8 kcal/mol or lower. Is there an additional program or analysis method I can use to identify the...

29 August 2024 6,442 1 View

What do you think about using AMBER99SB charge when docking with peptides using Autodock Vina?

I have 1215 peptides between 4 and 13 mer in length. I want to dock them with peptides using Autodock Vina, but I used AMBER99SB instead of Kollman charge to give better and reliable results. I...

12 May 2024 8,058 2 View