Md. Amdadul Huq

7 Questions 7 Answers 0 Followers

Questions related from Md. Amdadul Huq

How I can know the completeness and contamination level of bacterial genome sequence from assembled FASTA file?

I want to know the completeness and contamination level of bacterial genome sequence. I have the assembled FASTA file of the bacterial genome sequence. Are there any online tools where I can...

13 May 2024 9,875 2 View

How can I extract bacterial complete 16S rRNA gene sequence from the WGS (Whole genome sequence) ?

Dear experts, I want to extract a bacterial complete 16S rRNA gene sequence from WGS (Whole-genome sequence). I have a bacterial WGS (FASTA file=assembled scaffold's FASTA) with 6857405 bp that...

01 January 1970 8,832 5 View

How can I extract bacterial house keeping gene (gyrB, rpoD and rpoB gene) sequences from the WGS (Whole genome sequence)?

Dear experts, I want to extract my novel bacterial house keeping gene sequences (for 3 house keeping gene i.e. gyrB, rpoD and rpoB gene) from WGS (Whole-genome sequence). I have bacterial WGS...

01 January 1970 1,213 1 View

How to construct phylogenetic tree (bacterial) based on 4 house keeping genes (16S rRNA, gyrB, rpoD and rpoB genes)?

Dear experts, I want to construct bacterial phylogenetic tree based on 4 house keeping genes (16S rRNA, gyrB, rpoD and rpoB genes). Is there any online tools where I can upload the my novel...

01 January 1970 9,117 3 View

Is there any online tool to convert nucleotide sequence (bacterial whole genome sequence in FASTA format) into amino acid sequence?

Dear experts, I have a bacterial whole genome (nucleotide sequence) in FASTA format (assembled FASTA). I want to convert this nucleotide sequence into amino acid sequence. Is there any online...

01 January 1970 7,616 14 View

How I can know the completeness and contamination level of bacterial genome sequence from assembled FASTA file?

I want to know the completeness and contamination level of bacterial genome sequence. I have the assembled FASTA file of the bacterial genome sequence. Are there any online tools where I can...

01 January 1970 7,073 2 View

Bacterial genome contains 23 Motility and Chemotaxis genes but phenotypically it is non-flagellated and non-motile: What are the possible causes?

Dear experts, One of my novel Bacterial strains genome contains 23 Motility and Chemotaxis genes but phenotypically it is non-flagellated (observed by Transmission electron microscopes (TEM)...

01 January 1970 2,229 0 View