Martin Šindelář

3 Questions 8 Answers 0 Followers

Questions related from Martin Šindelář

How to align several protein sequences to whole genomes?

Hello everyone, is there a tool that could allow me to align protein sequences to genomes and works also well with shotgun genomes? I have Geneious prime, that allows me to align scaffolds from...

06 August 2020 2,737 4 View

How can I perform molecular docking with different protonation states according to different pH?

Dear all, I would like to perform docking with respect to different pH. Here Protein-Protein Docking with Dynamic Residue Protonation States I've read that pHDock is part of Rosetta...

22 May 2020 3,130 0 View

Pymol plugin Autodock Vina - error coused by python2->python3 incompatibilities?

Dear all, I have troubles setting my Autodock Vina plugin in Pymol 2.3.4 at Windows10 and also at my virtual machine with Ubuntu. When I want to generate receptor it has problem with...

02 May 2020 9,078 3 View