Luc Moulinier

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Questions related from Luc Moulinier

Does anyone have a BLOSUM62 matrix with identities set to a constant value, i.e. diagonal elements having the same value ?

An old PAM35 exists , having a value of 3,5 for identities (elements of the main diagonal) . However, this matrix is too crude, making R and H equivalent to F and Y for example. That's why I...

02 February 2017 5,179 1 View

Does someone have a BLOSUM62 matrix with all identities (the diagonal elelments) having the same value (i.e. (A,A) = (R,R) ) for example ) ?

Or maybe someone can tell me how to compute such a matrix starting with the native BLOSUM62 ? There are many blosum62 matrices at NCBI but none of them have "normalized" diagonal elements. An old...

02 February 2017 2,945 0 View