Lawrence T Reiter

2 Questions 20 Answers 0 Followers

Questions related from Lawrence T Reiter

Has anyone used a Statistical approach for the identification of ChIP-Enriched Regions (SICER) for broad domain analysis of ChIPseq data?

I am currently writing a grant application and was thinking of proposing to use SICER for the analysis of ChIPseq data from a transcription factor that binds chromatin, but not DNA. I am not...

25 January 2015 564 2 View

How can I use a TMAP aligner for RNA seq?

Has anyone tried to use BAM files from the IonExpress (Life Technologies) which are mapped using the TMAP software? Just looking at the output, it seems like TMAP is not very splice aware. I...

09 November 2014 2,740 3 View