Lakshmi Krishnakumaar

4 Questions 10 Answers 0 Followers

Questions related from Lakshmi Krishnakumaar

How to deal with the Ns in gene sequences

I have around 30 k sequences and need to find the codon frequencies how to deal with the presence of Ns in the sequence should i need to mask the regions or to replace with specific nucleotides...

09 June 2017 5,715 3 View

Is is possible to build a mathematical model of a few pathways?

I have a list of enzymes and KEGG orhthologous ids corresponding to the pathways of interest can I build a mathematical model for this data.What are the resources available for this purpose.

18 August 2015 509 6 View

How to enrich Transcriptome data analysis ?

I am working on algal transcriptome I performed a de novo assembly of the database retrieved reads made annotation with Blastx , GO, Pfam, PRIAM and Interproscan I have got the data only for about...

05 May 2015 7,963 3 View

Is gene prediction essential for algal transcriptome analysis?

I am working on algal transcriptomics(no genome sequence available) the transcriptom was sequenced and annotated by one research group is it necessary to perform gene prediction. If yes what is...

27 February 2015 8,745 6 View