Joseph Madison

2 Questions 6 Answers 0 Followers

Questions related from Joseph Madison

Why is Kraken2 host removal with a custom database generating .fastq files with spurious "x"s?

I'm using Kraken2 to generate a custom database to run a shotgun metagenomics (microbiome) dataset against for associated host removal (the custom database is the host). The database builds fine,...

25 October 2022 6,954 7 View

Host DNA Depletion for Microbial Shotgun Sequencing

Please share your preferred host DNA depletion method for microbial shotgun metagenomic sequencing. Please explain why. If your preferred method is to sequence everything and remove host reads...

01 January 1970 4,898 5 View