João Pedro Fernandes Queiroz

3 Questions 7 Answers 0 Followers

Questions related from João Pedro Fernandes Queiroz

Amber: how to apply a weak distance restraint between C-alpha atoms to push the binding partners in a homodimer in order to prevent dissociation?

Hello everyone, I used HDOCK to model the homodimeric form of a protein. I want to refine the docking solutions using the protocol briefly described in the paper below: Evaluation of Predicted...

11 July 2021 1,573 2 View

Someone can help me with a problem in MSA of protein sequences using mafft function from ips (R package)?

Hello everyone, I'm trying to perform a MSA of 130 protein sequences with a mean size of ~146 aa. I'm using the functions of the ips package to run MAFFT, Clustal, MUSCLE, T-Coffe etc. in R as...

09 May 2021 8,717 0 View

Does anyone have an RMarkdown template for manuscript submission to Protein Science or to another Wiley journal?

I'm using RMarkdown to write a complete and computationally reproducible report of my research. Also, I want to write manuscripts for submission using RMarkdown. It seems that eLife already...

01 January 1970 7,694 1 View