Jia Zhou

5 Questions 8 Answers 0 Followers

Questions related from Jia Zhou

About how to download all the gene info for one KEGG ORTHOLOGY?

I would like to download all the gene amino acid sequences for one KEGG orthology, but continuing encountering issues during the process. I intended to download 4000 genes, but always stopped at...

29 June 2023 8,843 1 View

About how to use kegg to classify gene protein family?

I am interested in one gene family, who has 16 kegg ID (K*). I extracted all the gene amino acid sequences under each one KEGG ID, but got confused about how different these amino acid sequences...

26 June 2023 2,510 3 View

Generate a structure file through PGDSpider?

Hi, I am trying to generate a structure file through PGDSpider, for a diploid organism, where each locus is in two consecutive columns in one row, rather than data for each individual be stored...

30 December 2020 5,393 1 View

How to calculate homozygosity by loci with SNPs dataset?

Hi all, I am trying to calculate homozygosity by loci from my SNPs data according to Aparicio et al., 2006 https://pubmed.ncbi.nlm.nih.gov/17107491/. I have a vcf file of 38,140 SNPs with 60...

22 December 2020 3,564 3 View

Why do my born sectioning slides have many bubbles?

The paraffin slides I got have a lot of bubbles (as in attached photos – w4, w5, w6). The samples were fixed with 10% neutral buffered formalin for 1 day, 1 week and 2 weeks. Then were...

20 July 2020 7,252 0 View